5 research outputs found
Fully-Automatic Multiresolution Idealization for Filtered Ion Channel Recordings: Flickering Event Detection
We propose a new model-free segmentation method, JULES, which combines recent
statistical multiresolution techniques with local deconvolution for
idealization of ion channel recordings. The multiresolution criterion takes
into account scales down to the sampling rate enabling the detection of
flickering events, i.e., events on small temporal scales, even below the filter
frequency. For such small scales the deconvolution step allows for a precise
determination of dwell times and, in particular, of amplitude levels, a task
which is not possible with common thresholding methods. This is confirmed
theoretically and in a comprehensive simulation study. In addition, JULES can
be applied as a preprocessing method for a refined hidden Markov analysis. Our
new methodolodgy allows us to show that gramicidin A flickering events have the
same amplitude as the slow gating events. JULES is available as an R function
jules in the package clampSeg